Li Xue

When we have 54,000 models each case, the path will be copied to 54,000 times.

What is the "Model" on the top right corner next to "Task"? You mean 3D protein models? Right underneath it, there is "Model training" ... We need to be careful...

The hdf5 files arrow should point to "Model and Tasks", right?

For Fig. 2D Bar chart: 1. Could we use something suggested by Sonja (i.e., no axis and only numbers on top of the bars): https://towardsdatascience.com/anything-but-bars-the-10-best-alternatives-to-bar-graphs-fecb2aaee53a 2. Could we use a...

Fig. 2B, can we use this plot and modify Fig. 2A accordingly? (pymol pse file for this figure: https://www.dropbox.com/s/glcj2eok0wafd73/Fig2.pse?dl=0) 

Fig. 2D, can we remove redundant color and do something like this: 

Hi Cunliang, How about something like this (in Dropbox: `deeprank_paper/Fig2_xue/Presentation1.pptx`: 

I tested your new fix code. The hdf5 file is able to be generated. But I got a warning: > /home/lixue1/tools/pdb2sql/pdb2sql/pdb2sqlcore.py:466: UserWarning: SQL query get an empty > warnings.warn('SQL query...

I also tested this code version on issue 139. I got the same warning message: `SQL get an empty`. A user may need to know what is the problem and...

Sorry, but if you remove that warning, will the user know when there is a problem with the pdb? I thought we need to report a warning from `deeprank` something...