Lilly May

Still persists for me even with the newest versions :/ But since this seems to be a bug specific to my machine, and it exists both before and after introducing...

We have the following six logging types: - Critical (I did not find any usages) - Error (I did not find any usages) - Warning (used 2 times) - Info...

Hi @Marwansha! As discussed via email, I’ve looked into your issue. I was able to reproduce it using your data. However, the problem was resolved for me when I normalized...

Hi @mainharryHR! Happy to report that the functionality you requested is now incorporated into pertpy. The `coda.plot_effects_barplot` method includes a parameter, `plot_zero_covariate`, which, if set to `True`, will also return...

Sounds good! I'm on it.

ToDos 2 and 3 are addressed in PR #644. I'll verify that the use cases work with Python 3.12 while converting the use-case notebooks into tutorials for the docs (see...

I ran the paper use-cases with Python 3.12 and created https://github.com/scverse/pertpy-tutorials/pull/48. Hence, I'll close this issue.

Hi @aterceros! I wasn't able to reproduce your error either, everything works fine on my end. Yes, please try using python >= 3.10 and let me know if that resolves...

I'll close this issue for now. @aterceros, please feel free to reopen it if you're still facing the issue.

Note to myself: - [X] Norman use-case - [X] McFarland use-case - [X] Zhang use-case excl. DIALOGUE - [ ] Zhang use-case DIALOGUE