LiberTEM
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LiberTEM
Open pixelated STEM framework
This is a proof of concept that it works and doesn't require much change. Closes #1205 No new dataset required for testing, apparently! MemoryDS does the job. Still TODO: -...
Adds a prototype notebook for parsing a raw Timepix3 file as sparse frames. Still a WIP. Links to #1207 ## Contributor Checklist: * [x] I have added or updated my...
Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 6.3.0 to 6.5.1. Release notes Sourced from nbconvert's releases. Release 6.5.1 No release notes provided. 6.5.0 What's Changed Drop dependency on testpath. by @anntzer in jupyter/nbconvert#1723 Adopt...
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* A few absolute values were missing Fortunately this is an edge case since we hardly process any complex input data! ## Contributor Checklist: * [x] I have added or...
`get_contiguous_view_for_tile()` can take a significant portion of an UDF run if many `kind='sig'` buffers are involved. It seems that methods of `Slice` and `Shape` take a majority of that time....
DECTRIS detectors set "bad" pixels to the maximum possible value. That throws off live plots and is annoying in practice. We should cut these outliers from the live plot auto...
For datasets which define their sig shape but not their nav shape (e.g. non-integrated Merlin), if a square number of frames is detected we could guess a square scan grid...
Adds support for using sparse arrays for the `roi` parameter in `run_udf` and similar locations. Responds to #1211. Currently only supports sparse arrays from [pydata.sparse](https://sparse.pydata.org/en/stable/) as they can be arbitrary-dimensional,...
Bumps [mistune](https://github.com/lepture/mistune) from 0.8.4 to 2.0.3. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...
# Release checklist Issues and pull requests to be considered for this release: * https://github.com/LiberTEM/LiberTEM/pull/1286 * https://github.com/LiberTEM/LiberTEM/pull/1267 * https://github.com/LiberTEM/LiberTEM/pull/1283 * https://github.com/LiberTEM/LiberTEM/pull/1289 * https://github.com/LiberTEM/LiberTEM/pull/1291 * https://github.com/LiberTEM/LiberTEM/pull/1293 * https://github.com/LiberTEM/LiberTEM/pull/1298 https://github.com/LiberTEM/LiberTEM/issues/1271 is planned...
