NetID
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LiChenPU
A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
Dear Prof.Chen, Thanks for your excellent work! I am a graduate student majoring in metabolomics. According to your User_guide, I have installed R, Rstudio, Rtools40, CPLEX and Git. And my...
How do I add MS2 data of my custom library? I have seen you have used the file "HMDB_pred_MS2_neg.rds" but how can I convert my .msp library into rds format?
Hi, @LiChenPU How to get HMDB ID in NetID_output file ? I try to match it using formula, but failed. First of all, the column of HMDB formula is redundant....
Hi, is there an easy way to install NetID on Linux, for example a container, notably to run it on an HPC cluster ? I am trying to find a...
After running the shiny_app.R The shiny closed quickly even before I could click any buttons... And the error is "Warning: Error in : Error evaluating 'x' parameter while selecting method...
Excuse me : I followed your toturial in Stpe4(Figure 1), to change the file but whether I change this cpxconst.h file or not, I always get the following errors in...
Hi Professor Chen, I am wondering whether we can skip the MS2 inclusion preparation part. Just removing MS2 scoring in the algorithm. How may I do that since I have...
Hi Professor Chen, Thanks for your amazing work ! I am trying to install cplexAPI, I encountered the similar problem. I already adopted your advice that set the file path...
Hi, may I ask how do you produce the ms2 data in .xlsx in Mouse_liver_neg\MS2_neg_200524? Thanks!
