LeonSaal

Error: plotVenn() with featureGroupsComparison

6

Hi Rick, I was trying to visualize the results of different feature finding approaches with `plotVenn()` but got an error I don't understand: ```r > comp = comparison(fGroupsPO, fGroupsXCMS, groupAlgo="xcms3")...

Request: Reduce cache size

10

Hi Rick, do you think it is possible to reduce the size of the cache file during filling of the cache? It blows up quite quickly and clutters my harddrive....

Request: 'in memory'-option

3

Hi Rick, I think it's great, that the package is so memory-efficient and lots of stuff is cached. However, I would appreciate, if there was an option to have spectra...

Hi there, thank you for implementing the PSDM in python, I really appreciate it! I would like to use the model in an own project and it would be nice...

Suggestion: performance of doGetEICs

1

Hi @rickhelmus, at this point I don't know how helpful it is to write issues for this version, as 3.0 is coming up, so please let me know, if it...

Error: assertion of analysisInfo for findFeatures

1

Hi Rick, I noticed, that depending on the `data.frame` implementation from different libraries used for the `analysisInfo` during feature finding, issues arise in later steps of the sets-workflow, namely during...

Hi @rickhelmus, this is not urgent, but I think it might be nice, if for possibly longer operations like loading of EICs *e.g.* during `checkFeatures` or `calculatePeakQualities`, one would have...

Question: Naming of Columns for Set-objects

3

Hi @rickhelmus, when working in a sets workflow, I noticed that for *e.g.* a `compoundsSet`, the `as.data.table`-method produces one column for each polarity for each parameter *e.g.* `rank-positive` and `rank-negative`....

Suggestion: Simplify usage checkFeatures

1

Hi Rick, 1. to further improve `checkFeatures` in the future, I think it would be nice if it worked similar to dating-apps i.e. press left or right to keep/omit and...