Lena Oestreich

Copied and pasted below. I tried it with and without flipping the peaks: calc_FA -i ${subj}_dwi_b1000.nii.gz -o ${subj}_FA.nii.gz --bvals ${subj}_dwi_b1000.bval --bvecs ${subj}_dwi_b1000.bvec \ --brain_mask nodif_brain_mask.nii.gz flirt -ref /Users/uqloestr/anaconda3/lib/python3.10/site-packages/tractseg/resources/MNI_FA_template.nii.gz -in ${subj}_FA.nii.gz...

I just did but it's not working either. The binary maps look good to me. Here 2 examples of the left arcuate and CC1:   I also managed to...

Thanks! Here is a link to the data for 1 pp. I included the raw data and the folders with the processed data, as far as I got: https://www.dropbox.com/scl/fo/5fjuprjtnkpj7gsv37kqo/h?dl=0&rlkey=ze4jtoqdkjraox746evde3mr7 From:...

Thanks, I just tried that but still get the same error when I run tracking: ***@***.*** Do you have any idea what it might cause this? Should I try reinstalling...

That worked. I ran it on a computer that had miniconda instead of anaconda, but I think the other software and versions were the same. It’s odd cause the one...