Fabian Lehmann
Fabian Lehmann
Until now, Nextflow evaluates Closures to stage multiple Inputfiles only once. Accordingly, it cannot produce individual staging names for different files in one Channel/one task. However, it might be helpful...
This PR adds two tests for yet not working cases. However, I was unable to fix them. The **first issu**e occurs if you define a method in a configuration file....
Today I spent some time finding out how to group tuples when the group sizes vary. Currently, I have to do it this way. ``` Channel .from( [1,'A'], [1,'B'], [2,'C'],...
In an old version of [nf-core/viralrecon](https://github.com/nf-core/viralrecon/) I found the following code: https://github.com/nf-core/viralrecon/blob/75a2f9763e9b4c1aa20ad342ae3ce148c33cc65a/main.nf#L660-L661 Creating symlinks leads to problems if the workflow is executed in a scratch directory, moving the outputs. This...
As I promised in my PR [https://github.com/nextflow-io/nextflow/pull/2035](https://github.com/nextflow-io/nextflow/pull/2035), I copied my tests into a new branch and adjusted them to the new logic. I also fixed problems with special characters. So...
Signed-off-by: Lehmann-Fabian
Using `process.stageOutMode = 'move'` will only move files that match the output from a temporary directory to the working directory. Here, it breaks the symlink `${prefix}.bam -> $bam` as only...