Lee Bergstrand

kaiju2table -- Meaning of "cannot be assigned to a (non-viral) X"

9

Problem Description: =============== I'm running the following command:. ```shell kaiju2table -o ./narmena_results.tsv \ -t nodes.dmp \ -n names.dmp \ -r species \ -l superkingdom,phylum,class,order,family,genus,species \ -e *.tsv ``` I'm interested...

### Problem Description Currently, the CLI and the documentation state the following for the `--genes` parameter: ``` indicates input files contain called genes (skip gene calling).Warning: This flag will skip...

Cross site scripting...

8

Hello, a couple of days ago I was considering building a library like this (client-side javascript) and incorporating it into a bioinformatics web application. However, I ran into some issues...

Temp files are not deleted for rule before checkpoint that is rerun after checkpoint with new data.

6

**Snakemake version** Snakemake Version: 8.16.0 Bug first occurs at version 8.6.0 The bug does not occur in 8.5.5 **Describe the bug** I have a rule that polishes a nanopore genome....