Lain-inrae
Lain-inrae
There is another problem, that may be corrected by the same bugfix (so I did not open a new issue). The stdout seems to be duplicated. For example, I get...
The problem comes from the way galaxy tests a tool: `galaxy.tool_util.verify.script._test_tool` function uses the `galaxy.tool_util.verify.interactor.verify_tool`, which uses the interactor (so, the api) to retrieve the job's json data... This json's...
In fact, it may be quite easy to provide function written in python: ```R non_empty_existing_file
> but the lambda functions would have to be fairly long That's why I suggested to add an "env preparation code": instead of writting a lambda, we could then write...
Is this PR still alive? @lecorguille
There are no problem with this solution (I think, I have not tested the tool). The problem is: when galaxy tries to install the tool, we don't have the choice...
If I don't have the choice, I will install it myself - I will bypass galaxy's installation process. But that makes the deployment of our galaxy (and it tools) non...
Hello, I come back after some investigation about r-batch. This package has not not been maintained since 2018. It is - in a majority of cases - used for command...