LYC-vio

Thank you! Do you mean the `--threads` does not change the actural number of threads SVDSS uses for the index step? Or you are referring to the index thread settings...

Hi, @ldenti , Is `--cutoff` parameter still in SVDSS? I cannot find it in the help information of SVDSS v1.0.5 binary Thank you

you may need to remove the --passonly flag (since NanoSV does not use PASS in vcf's FILTER field), also, you need to change RT=3 to RT=. (or RT=1) in the...

And change ##FILTER=