scRNAseq
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LTLA
Clone of the Bioconductor repository for the scRNAseq package.
Column metadata for this dataset supposedly contains experimentally determined cell cycle phase for each cell, however: ``` sce.ref
``` > z = PaulHSCData(legacy=FALSE) The value -2^31 was detected in the dataset. This has been converted to NA within R. The value -2^31 was detected in the dataset. This...
In Bioc release: ``` > library(scRNAseq) > sce.seger rowData(sce.seger) DataFrame with 26179 rows and 2 columns symbol refseq SGIP1 SGIP1 NM_032291 AZIN2 AZIN2 NM_052998+NM_001293562 CLIC4 CLIC4 NM_013943 AGBL4 AGBL4 NM_032785...
Hi all! Thanks so much for this tool. Would it be possible to add this recent atlas from the Linnarsson lab, https://github.com/linnarsson-lab/developing-human-brain? I also plan to use this with SingleR...
Hi I am trying to use SingleR for annotating my clusters. I would use "Pancreas" datasets but I get this error: "> query(eh, "BaronPancreasData('human')") ExperimentHub with 0 records snapshotDate(): 2022-10-31"...
Hi, I tried to leverage the singleR package to add the annotation to data. Instead of using the built-in data, I want to use HeOrganAtlasData (including different human organs) for...
Hi Aaron, I'm currently creating an atlas of all cell types and states in a secondary lymphoid organ in the context of the Human Cell Atlas. As part of the...
Hi, thank you for the user-friendly package! It is convenient to take scRNAseq datasets as reference data, but some datasets seems lack of cell identity labels, like the StoeckiusHashingData. I...
@dtm2451 the time has cometh. Should be as simple as copying one of the other getters to `BunisHSPCData.R`, renaming the function and changing the path to `bunis-hspc`. - Make sure...