Aaron Lun

Pushed to 2.4.1, should be available in a few days.

I've noticed that many of the issues in this repository relate around the installation of the Python dependencies. We've been working on resolving this in the context of Bioconductor packages...

> Is it going into the next Bioconductor release? I hope so, but we're at a bit of a chicken-and-egg moment; I need to convince the core team that it's...

Why can't a perfect round-trip be achieved without compression/indexing/TabixFile? These things have nothing to do with the inclusion of unnecessary `##config` headers or the replacement of the `fileDate`.

No rush, I only stumbled across this because of the **alabaster.vcf** tests.

Sorry for the late reply. I don't have any issues running the example: ```r library(batchelor) example(fastMNN, echo=FALSE) out ## class: SingleCellExperiment ## dim: 200 100 ## metadata(2): merge.info pca.info ##...

I have no such problems with running `example(fastMNN)`: ```r > example(fastMNN) fstMNN> B1 B2 out

Strongly advise against chucking the `spatialCoords` in the `reducedDims`, because the former is not the latter. It's not just a question of data structure, it's a question of semantics. Downstream...

It would also save me having to do `importFrom(DelayedArray, DelayedArray)`.

Oops. How embarrassing; fixed in 2.17.10. (This will release as 2.18.0 next week with the new BioC release.)