Léo-Paul Dagallier

icon location Interested in plants, macroevolution and biogeography (often all together), and music. Coding mainly in R and bash. Post-doc at the New York Botanical Garden.

Results 5 issues of Léo-Paul Dagallier

read.iqtree and regular bootstrap

Hi, Let's take the case were a tree has been inferred with IQTREE, but branch support was assessed with non-paramteric bootstrap (BS) and not with UFBoot or SH-alrt. I just...

Choice for displaying either level names or level counts

It should fix issue #4 . It worked at least on the data I used.

impossible to labelise with level counts instead of level names

By default (label = TRUE), each level is labelised with its name, or is not labelised if label = FALSE. It could be interesting to labelise each level with the...

freqQuad.csv produced by wastral-hybrid -u3 is different from freqQuad.csv produced by astral -t16

Hello, I used astral-hybrid (weighted astral) from ASTER to produce freqQuad.csv using -u3 option, but the file produced seem to have calculated the stats on irrelevant nodes. To check, I...

Captus Extract: missing extractions for some loci in some samples

3 comment

Hi, Thanks a lot for this great tool ! It is very efficient and easy to use, and the documentation and outputs are super clear ! I faced an issue...