masif
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LPDI-EPFL
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
In my project, i want the features scrached from the surface of protein . Therefore, i wonder how can i get the features list
Hello, some problem about Masif-search and Masif-site. If I want to obtain a new model which only train on some interacted single protein structure, can it be achieved? It seems...
Hi masif authors! I want to extract protein-level embeddings using masif. May I know if it is possible? Would appreciate if an example could be illustrated. Thanks!
I cant find : export MULTIVALUE_BIN=/path/to/apbs/APBS-1.5-linux64/share/apbs/tools/bin/multivalue i do: export MULTIVALUE_BIN=/home/ubuntu/miniconda3/envs/masif/share/apbs/tools/mesh/multivalue.c multivalue is a C program, when i run it , OSError: [Errno 8] Exec format error
Hi! For my master thesis I'm working with experimentally uncharacterized proteins and I only have a AlphaFold prediction. I am interested in using this program. Is it possible? I've been...
The paper on Nature: """ β-Strand seed library generation To collect β-strand motifs, a snapshot of the non-redundant set of the PDB was preprocessed with the MASTER softwareto enable fast...
I am currently working with MaSIF-search and am looking for a way to extract the residual numbers of a patch to validate the results. Does anyone know if this is...
I have a specific inquiry regarding the hardware specifications used during the training of the masif-site and masif-search models. Despite utilizing a computer with 16GB of physical memory and an...
I have a known sequence of amino acid residues of a protein; how can I obtain the corresponding patch information ？
hello professor, I can't download reduce python package from anaconda or pip. Could you please tell me the right way to download it?
