CAFE_fig
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LKremer
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
Hello, I really like this fantastic program to draw Cafe output files. When I used it with my data, the numbers of significantly expanded and contracted families are the same...
Hello! When i run the script, i met a problem. The problem: Parsing CAFE report... done! Writing test/summary.pdf qt.qpa.xcb: could not connect to display qt.qpa.plugin: Could not load the Qt...
Cannot work with CAFE version 5.
Installation process and environment ``` conda create -n CAFE_fig -c etetoolkit 'ete3==3.0.0b35' conda list # # Name Version Build Channel blas 1.0 mkl http://mirrors.ustc.edu.cn/anaconda/pkgs/free cairo 1.14.8 0 http://mirrors.ustc.edu.cn/anaconda/pkgs/free certifi 2016.2.28...
Hi, CAFE_fig is cool to plot a gene family tree. When I used CAFE_fig to plot my result of cafe (version=4.2.1), there was an error as follow: Parsing CAFE report......
-bash-4.2$ python3 ./CAFE_fig-master/CAFE_fig.py resultfie1.cafe -pb 0.05 -pf 0.05 --dump test/ -g pdf --count_all_expansions The directory "test/" already exists. Overwrite it and delete all its contents? (y/n)? y Parsing CAFE report......
Hi LKremer I am trying to use CAFE_fig to visualize the results from CAFE, but I encountered some problems. Here is my running: python3 ./CAFE_fig-master/CAFE_fig.py out.cafe And these are output:...
Dear LKremer, Thank you for this softeware, while when I run the example date, black and white figure output. ` python ./CAFE_fig.py example_result.cafe -c Isoptera=zne,mna -pb 0.05 -pf 0.05 --dump...
> @njliangdong this seems to be an issue with the installation of ete3. Maybe you don't have read and execute permissions in your ete3 installation directory? i have met the...
Hi, @LKremer I am trying to use CAFE_fig to visualize the results from CAFE, but I encountered some problems. Here is my running: python3 ./CAFE_fig/CAFE_fig.py cafe_result.cafe -c asc=vL, da -pb...
