No_color for the example data

[xiaoaozqd]

Dear LKremer, Thank you for this softeware, while when I run the example date, black and white figure output.

python ./CAFE_fig.py example_result.cafe -c Isoptera=zne,mna -pb 0.05 -pf 0.05 --dump test2/ -g .pdf --count_all_expansions

[ZexinTong]

hey, Xiao! I encountered the same problem. Have you figured it out?

[xiaoaozqd]

hey, Xiao! I encountered the same problem. Have you figured it out?

No

[connie365]

Hi guys! Have you figure out the problem? I've struggle with it for a long time.

[wanghua1981]

Hey, guys, I think it's because you set the λ the same for all the nodes, so there is no difference between min lambda and max lambda, so there is no colour.

[connie365]

Thanks a lot! Yes, you're right, I have figured it out. But another question is coming followby that how to set the λ, I mean, how to set the λ between different species when I don't know the exact relationships of evolutionary rate.

At 2021-04-14 18:28:18, "wanghua1981" @.***> wrote:

Hey, guys, I think it's because you set the λ the same for all the nodes, so there is no different between min lambda and max lambda, so there is no colour.

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[wanghua1981]

Thanks a lot! Yes, you're right, I have figured it out. But another question is coming followby that how to set the λ, I mean, how to set the λ between different species when I don't know the exact relationships of evolutionary rate. At 2021-04-14 18:28:18, "wanghua1981" @.***> wrote: Hey, guys, I think it's because you set the λ the same for all the nodes, so there is no different between min lambda and max lambda, so there is no colour. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

there is a guide about how to estimate the λ between species in the cafe manual .