LAlvarezGlez

No CIGAR result in one line of the output SAM

4

Hello everyone, I have used minimap2 to map nanopore reads to a genome assembly I want to improve. I used the following command: `minimap2 -ax map-ont ref.fa ont-reads.fq > aln.sam...

How to create a one chromosome cool matrix

6

Hi, I am quite new with the cool format and I am not able to understand how to do this. I have a genome-wide .cool matrix and to perform some...

Index Error when running hic_data.find_compartments

1

Hi! I am trying to run hic_data.find_compartments and no matter what parameter I change or what input data I use I keep getting this error: eigenvectors = hic_data.find_compartments(label_compartments="none", perc_zero=99, max_ev=5)...

Segmentation fault

1

Hi! I am trying to run racon (v1.4.22) to correct the assembly of some nanopore reads (coverage x5). So far I have done the following: ``` minimap2 -ax map-ont -t...

Conditions for conservation analysis of syntenic blocks

5

Hi! I am analyzing the level of chromatin conformation conservation between different species, and chess looks like the perfect tool for me! I already have the synteny blocks between the...