Kyxsune

#8 Once this request is pulled this process won't be neccessary

For the functional annotation step the following commands were run: |2015-07-14 16:14:22|# [FUNCTIONALANNOTATION] |2015-07-14 16:26:43| [Path to Directory]/metAMOS-1.5rc3/Utilities/cpp/Linux-x86_64/blastall -p blastp -i [Path to Directory]/Desktop/GenomeTK2/Mix2/FindORFS/out/proba.faa -d [Path to Directory]/Desktop/metAMOS-1.5rc3/Utilities/DB//uniprot_sprot.fasta -a 39...

Found it (I think). The bottleneck is inside the fannotate.py file.(https://github.com/marbl/metAMOS/blob/v1.5rc3/src/fannotate.py) When parsing the data from the blast.out file it only writes those that have a length over 50 ,...

Can be seen on the hosted instance as well: https://huggingface.co/spaces/gradio/plot_guide_interactive