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                                            KurotakiDaisuke

make: *** [/HiC-Pro_3.0.0/bin/../scripts//Makefile:144: bowtie_pairing] Error 1

Hello, I am using conda HiC-pro 3.1.0. I have the same error. I prefer to use the HiC-pro instead of other software. Is there any solution to this problem? Thanks!...

make: *** [/HiC-Pro_3.0.0/bin/../scripts//Makefile:144: bowtie_pairing] Error 1

Thanks! I have already analyzed the same fastq files using Juicer and successfully obtained output files such as .hic files.

make: *** [/HiC-Pro_3.0.0/bin/../scripts//Makefile:144: bowtie_pairing] Error 1

Can I convert Juicer .hic files to validPairs files? Thanks for your help!