YunLiu

Fixes # . ### Description Add PythonicWorkflow ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change...

### Discussed in https://github.com/Project-MONAI/MONAI/discussions/8081 Originally posted by **thibaultdvx** September 13, 2024 Hi, I would like to suggest to add the [**Average Precision**](https://scikit-learn.org/stable/modules/generated/sklearn.metrics.average_precision_score.html) in the classification metrics. I think that the...

DeprecationWarning when import monai

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``` /usr/local/lib/python3.10/dist-packages/ignite/handlers/checkpoint.py:16: DeprecationWarning: `TorchScript` support for functional optimizers is deprecated and will be removed in a future PyTorch release. Consider using the `torch.compile` optimizer instead. from torch.distributed.optim import ZeroRedundancyOptimizer /usr/local/lib/python3.10/dist-packages/modelopt/torch/quantization/tensor_quant.py:92:...

Enable relative positional embedding in flash attention

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From reading this thread: https://github.com/pytorch/pytorch/issues/96099#issuecomment-1480430583 It seems to me that the relative positional embedding can be integrated with `scaled_dot_product_attention` 's `attn_mask` argument. However, it can be slow as it's not...

AssertionError in TestSURELoss

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``` ====================================================================== FAIL: test_complex_general_input (tests.test_sure_loss.TestSURELoss) Test SURELoss with complex-valued input: when the input is general complex value, the loss should be 0.0. ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/runner/work/MONAI/MONAI/tests/test_sure_loss.py",...

``` 18:59:33 ====================================================================== 18:59:33 ERROR: test_script_0 (tests.test_unetr.TestUNETR) 18:59:33 ---------------------------------------------------------------------- 18:59:33 Traceback (most recent call last): 18:59:33 File "/usr/local/lib/python3.10/dist-packages/parameterized/parameterized.py", line 620, in standalone_func 18:59:33 return func(*(a + p.args), **p.kwargs, **kw) 18:59:33...

``` [2024-07-19T08:26:40.096Z] set build/lib/monai/_version.py to '1.3.3rc1' [2024-07-19T08:26:40.096Z] running install [2024-07-19T08:26:40.096Z] running install_lib [2024-07-19T08:26:40.096Z] Traceback (most recent call last): [2024-07-19T08:26:40.096Z] File "/usr/lib/python3/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in [2024-07-19T08:26:40.096Z] main() [2024-07-19T08:26:40.096Z] File "/usr/lib/python3/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line...

maisi_diff_unet_training_tutorial.ipynb hit random Segmentation fault on H100

1

``` Executing Cell 19-------------------------------------- INFO:notebook:Training the model... INFO:training:Using cuda:0 of 1 INFO:training:[config] ckpt_folder -> ./temp_work_dir/./models. INFO:training:[config] data_root -> ./temp_work_dir/./embeddings. INFO:training:[config] data_list -> ./temp_work_dir/sim_datalist.json. INFO:training:[config] lr -> 0.0001. INFO:training:[config] num_epochs ->...

``` Executing Cell 19-------------------------------------- INFO:notebook:Training the model... INFO:training:Using cuda:0 of 1 INFO:training:[config] ckpt_folder -> ./temp_work_dir/./models. INFO:training:[config] data_root -> ./temp_work_dir/./embeddings. INFO:training:[config] data_list -> ./temp_work_dir/sim_datalist.json. INFO:training:[config] lr -> 0.0001. INFO:training:[config] num_epochs ->...

TypeError: create.<locals>.Validator.__init__() got an unexpected keyword argument 'registry'

1

``` [2024-09-01T16:26:05.898Z] Running ./pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb [2024-09-01T16:26:05.898Z] Checking PEP8 compliance... [2024-09-01T16:26:06.154Z] Traceback (most recent call last): [2024-09-01T16:26:06.154Z] File "/usr/local/bin/jupytext", line 5, in [2024-09-01T16:26:06.154Z] from jupytext.cli import jupytext [2024-09-01T16:26:06.154Z] File "/usr/local/lib/python3.10/dist-packages/jupytext/__init__.py", line 9,...