YunLiu

Insufficient error message when interrupted in `DataAnalyzer` ``` root@5614474:/workspace/demo21/samm# git add . 72%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████▋ | 4016/5587 [1:26:36

Fixes #7327 ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that...

Update "acceleration/TensorRT_inference_acceleration.ipynb"

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Fixes #1667 ### Checks - [ ] Avoid including large-size files in the PR. - [ ] Clean up long text outputs from code cells in the notebook. - [...

``` 2024-03-16 04:11:18,952 - INFO - Setting logging properties based on config: ./endoscopic_tool_segmentation/configs/logging.conf. monai.bundle.workflows ConfigWorkflow.__init__:workflow: Argument `workflow` has been deprecated since version 1.2. It will be removed in version 1.5....

``` 08:26:03 Running ./pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb 08:26:03 Checking PEP8 compliance... 08:26:03 Running notebook... 08:26:11 MONAI version: 1.3.0+87.ge9e27385 08:26:11 Numpy version: 1.22.2 08:26:11 Pytorch version: 2.1.0a0+29c30b1 08:26:11 MONAI flags: HAS_EXT = False, USE_COMPILED...

module 'aim' has no attribute 'Run'

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``` 07:00:29 /usr/local/lib/python3.10/dist-packages/papermill/iorw.py:153: UserWarning: the file is not specified with any extension : - 07:00:29 warnings.warn( 07:00:29 Traceback (most recent call last): 07:00:29 File "/usr/local/bin/papermill", line 8, in 07:00:29 sys.exit(papermill())...

Too large `step_size` in deepedit

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**Describe the bug** Too large `step_size` which may cause the learning rate never decreases unless the model is trained for 5000 epochs. https://github.com/Project-MONAI/tutorials/blob/bbc4e180f5130859396a98e35523bc73fa694595/deepedit/ignite/train.py#L268 **Expected behavior** Set smaller `step_size` or set...

nbclient.exceptions.DeadKernelError: Kernel died in ./modules/3d_image_transforms.ipynb

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``` [2024-04-24T07:17:21.826Z] + ./runner.sh -t modules/3d_image_transforms.ipynb [2024-04-24T07:17:21.826Z] -and -wholename ./modules/3d_image_transforms.ipynb [2024-04-24T07:17:22.082Z] Notebook files to be tested: [2024-04-24T07:17:22.082Z] ./modules/3d_image_transforms.ipynb [2024-04-24T07:17:22.082Z] Running ./modules/3d_image_transforms.ipynb [2024-04-24T07:17:22.082Z] Checking PEP8 compliance... [2024-04-24T07:17:23.011Z] Running notebook... [2024-04-24T07:17:31.108Z] MONAI...

Kernel hangs in "TCIA_PROSTATEx_Prostate_MRI_Anatomy_Model.ipynb"

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**Describe the bug** Kernel hangs after itkwidgets visualization in jupyter notebook https://github.com/Project-MONAI/tutorials/blob/main/model_zoo/TCIA_PROSTATEx_Prostate_MRI_Anatomy_Model.ipynb **To Reproduce** 1. docker pull projectmonai/monai:latest 2. create a new container 3. run into container 4. `pip install...

Merge dev to geometric

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Make geometric branch up to date with the dev ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ]...