Kuan-Hao, Chao

Hi @padpadpadpad, Thanks for using sangeranalyseR. Short answer is "Yes!", you can do everything in R-shell. We rewrote sangeranlyseR in object-oriented way, and it includes all the old features. If...

Hi @anugos, In the latest DECIPHER package, the `IdCluster()` is replaced by `TreeLine()` function, and the `TreeLine()` is called inside the `SangerAlignment()` function that you are running. Since your error...

Hi @jspychalla, Please excuse the delay. DECIPHER changed the IdClusters function to TreeLine. But this issue was solved in 3.15 release. Which version of sangeranalyseR are you using? Please upgrade...

Hi @Jordan-Soria , Sorry for my late reply. I am still working on the `launchApp` problem that you encountered. I will find a Windows OS computer to test it recently....

Hi @Jordan-Soria I have tried your data. The reason why there was no consensus read in your R shiny app is because it was not created correctly. You used the...

@roblanf That sounds like a great idea! I’ll include this feature recently 👍

These are the summary tables after S4 objects are successfully created. It is included in the newest commit. ### SangerRead Level ### SangerContig Level ### SangerAlignment Level

Update sangeranalyseR reads creation df table: 1. SangerRead - [x] Change errors detection hierarchy - [x] Creating a summary to show the creation status of the read 2. SangerContig -...

Hi @dmaher14 , Sorry for my late reply. The document on Bioconductor is the old version. You can check the latest example on Github homepage [Link](https://github.com/roblanf/sangeranalyseR) or [sangeranalyseR documentation](https://sangeranalyser.readthedocs.io/en/latest/). There...

Hi @dmaher14 , Please install sangeranlyseR again from github [link](https://sangeranalyser.readthedocs.io/en/latest/content/installation.html). After installing it, it should work! Please let me know if it doesn't work. Best, Kuan-Hao