nk3 comments

Results 8 comments of

nk3

ERROR in reading reference index.

my chromosome names are ``` Chr2 Chr7 Chr13 Chr11 Chr19 Chr15 Chr18 Chr1 Chr4 Chr6 Chr8 Chr9 Chr5 Chr3 Chr10 Chr12 Chr14 Chr16 Chr17 ```

[E::idx_find_and_load] Could not retrieve index file for '-'

I cant figure out this either, are there any progresses?

Illegal division by zero at ProcessRepeats line 7999.

The part I’m still confused about is: when I ran RepeatMasker the first time, it didn’t report any errors, but it also didn’t output any GFF, HTML, or masked FA...

Illegal division by zero at ProcessRepeats line 7999.

[out.60584.log](https://github.com/user-attachments/files/16843004/out.60584.log)

Illegal division by zero at ProcessRepeats line 7999.

Hi, dear RepeatMasker developers @rmhubley @jebrosen @diekhans , I apologize if my previous description was unclear. I am encountering a similar issue once again. I would greatly appreciate any assistance...

Illegal division by zero at ProcessRepeats line 7999.

I have uploaded it to Google Drive. Please check the link: https://drive.google.com/file/d/18r65XMBZFI4ctUEScO3vWNNGgyxlHzgm/view?usp=sharing

Illegal division by zero at ProcessRepeats line 7999.

Thank you for your attention and follow-up! Strangely, I didn't use the -nolow flag in my run. And this is the test output: ```$ RepeatMasker -e ncbi -html -gff -dir...

Illegal division by zero at ProcessRepeats line 7999.

Thank you very much for your patient guidance and help. I am a bit occupied at the moment, but I will let you know as soon as there are updates.