FIt-SNE

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compile fitsne error

3

I use this command to compile from the main page: ```bash g++ -std=c++11 -O3 src/sptree.cpp src/tsne.cpp src/nbodyfft.cpp -o bin/fast_tsne -pthread -lfftw3 -lm ``` but got a warning, and the program...

zyh3826

Error in pip install fitsne

9

Hi, here. I tried to install Fit-SNE by the command line "pip install fitsne". However, there seemed to be somthing wrong with gcc. `pip install fitsne` ``` Looking in indexes:...

Zifeng-L

Hi! Are you planning to improve the algorithm to include more than 2 dimensions? Would that be possible? Any idea how 3 tsne components/ 3 dimensions would be possible with...

ghost

Memory Allocation Failed - Large Datasets

7

Hi all, I've been trying to run FIt-SNE on a FCS file 20 million events large. Unfortunately, despite allocating 1.5TB of memory, an error still arises (below). This does not...

TonyX26

Hi all, Thanks very much for being patient with me - it's very much appreciated. I've attempted to make some of the relevant changes, however sadly these haven't fixed the...

TonyX26

sg-s

Update fast_tsne.m

6

line 256: for cmd to run fit-tsne, it should be FItSNE.exe rather than fast_tsne to be used for calculation

fancy23

Could not run in Google Colab

1

Hello, I am trying to run fast_tsne.py in Google Colab due to inadequity of my system. When I tried to run the code I am getting the error below: FileNotFoundError:...

sabotaha

Error while compiling FIt-SNE v1.1.0 or 1.0.0 solved Fedora 31 5.6.8-200 while using with Seurat 3.1

9

Hi, I do not know if you had a problem similar to mine, but if yes so there is a solution which I have found. I have not found a...

rafalwoycicki

Always get an error about version when using this in SEURAT 3.1.5

3

Dear developer, I am using this method in Seurat 3.1.5 in windows 10. I extracted the libfftw3-3.dll and FIt-SNE.exe in bin/ folder and included the following commands in my code:...

MeganQiu