FIt-SNE
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KlugerLab
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
After installing the current version, using R 3.5.0 and Fedora 28, the example code in examples/test.R runs fine. However, when attempting to analyze a larger dataset (a matrix with dimensions...
It states that I should pass a list, which in R would be using `list()`. Additionally, it also states that `perplexity` should be set to 0 to use this option...
How to install KlugerLab / FIt-SNE for Seurat usage in Windows 10 system ? I recently want to use this tSNE method to classify my seurat object. And I find...
Would it be possible to assign weights to observations, so that the user can define how much a single observation contributes to the overall objective function? For my particular use...
Current FIt-SNE only supports 1D and 2D reduction, will the future FIt-SNE support 3D reduction? 3D reduction is also appealing.
The speed of FIt-SNE is amazing. Can FIt-SNE accept precomputed similarity matrix? I used the Matlab wrapper and inputted a precomputed similarity matrix with the "load" option, but errors were...
Hello, I tried to install and run fast_tsne in bin folder, but it fails saying the following everytime: =============== t-SNE v1.1.0 =============== Wrapper passed wrong version number: --version Could you...
Hi, I've been playing with the code and it's speed is very impressive. Most of the example employ real valued representations of the objects. Is the method applicable to a...
The terminal output before the gradient descent is a bit of a mess and always annoys me slightly :-) ```=============== t-SNE v1.1.0 =============== fast_tsne data_path: data.dat fast_tsne result_path: result.dat fast_tsne...
When preparing a public talk, I often want to include an animation of how t-SNE develops during gradient descent. I thought I can call `fast_tsne` in a loop with `max_iter=1`...