KlemensFroehlich

hi sagi, Can you simply perform 4 completely separate analyses and look at the correlation of the results? Correlation of fold changes of proteins would be very interesting to see....

hi patrick and Vadim, I am using special FASTAs with additional decoy entries to cotrol the FDR additionally. My output contains these decoys. This might not be perfect as instead...

hi Tobi, cool colors.... somehow reminds me of a certain publication :D Thanks for the insight! This is really cool. Best Klemens

Thanks Fengchao for the answer. Looking forward to using fragpipe for everything, including TMT in the future :) Best, Klemens