Rasmus Kirkegaard

icon indicating a website link http:/dk.linkedin.com/in/rasmuskirkegaard/

icon company University of Aalborg icon location Aalborg icon location Currently employed as a staff scientist at AAU working on generating high quality genomes from various environments using @nanoporetech DNA sequencing

Results 23 comments of Rasmus Kirkegaard

need a wiki for generating basic input data

Hi @LBMSpeirs you can check this out for inspiration https://github.com/Kirk3gaard/misc_scripts/tree/master/prepare_data_for_mmgenome2

Dorado Basecaller filter 90% of reads on Hac or Sup models (but not on Fast model)

Tested this on a small set of 10000 reads with dorado v 0.8.2 and 3 different sup model versions (4.2.0, 4.3.0, and 5.0.0). Filtering: 0, 456, and **9379 reads** Commands...

Dorado Basecaller filter 90% of reads on Hac or Sup models (but not on Fast model)

10k read test data from @SebastianDall : https://www.dropbox.com/scl/fi/9f51sxtd5mmxxxpjcg8gm/10k.pod5?rlkey=b6sbf4gzipg3b830yusxra4mf&dl=0 Yes we have seen the issue on RTX4090 and A10.