GetOrganelle
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Kinggerm
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
Hi, I've had generally good success assembling chloroplasts with `get_organelle_from_assembly.py`! One of my samples fails though, with three repeats of the message `Consensus made: (187292-|189390+)` followed by `Disentangling failed: 'Unable...
[get_org.log.txt](https://github.com/Kinggerm/GetOrganelle/files/10263090/get_org.log.txt) [get_mitogenomes.txt](https://github.com/Kinggerm/GetOrganelle/files/10263095/get_mitogenomes.txt) I am having this error message when I run GetOrganelle. I use the dependencies the cluster where I work on and till last week tjere where no problems...
Hi Dr Jin, I have assembled my data into a circle plastome already, but I found a segment in IR regions with extremely lower coverage than other regions when I...
Hi! I am trying to assemble a mitochondrial genome from freshwater crabs in my Laptop and on the rounds part the process fails. I already assembled two mitogenomes a few...
Hi! Thanks for developing this great tool. I'm trying to use this for multiple individuals, and I have multiple forward and reverse reads for each type. For now, I see...
Dear developer team, after running the fourth round of extracted reads, the program was killed. There are no other error messages. I tried to rerun the py script and was...
 Hi, here is graph of a gfa file, base one this file I got four path_sequence.fasta files with size 184 kb, is it possible? How can I explain these...
GetOrganelle v1.7.7.1 When I run get_organelle_from_reads.py according to the tutorial example,if I use -F anonym, it will not run and report an error: ``` get_organelle_from_reads.py", line 843, in get_options ref_seqs...
On a local computer, the program runs fine, but when using the SGEsystem, the get_organelle_config.py script is unable to run regardless of whether the default path or a manually specified...
Hello！@JianjunJin， I try to use hifiasm result to assembling the chloroplast genome.Here is my codes ```perl get_organelle_config.py -a embplant_pt,embplant_mt --use-local ./GetOrganelleDB/0.0.1 get_organelle_from_assembly.py -g ./lh_green.hic.p_utg.gfa -o plastome_output -F embplant_pt --max-depth 100...
