GetOrganelle
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Kinggerm
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
In the [wiki](https://github.com/Kinggerm/GetOrganelle/wiki/FAQ#what-are-the-differences-of-complete1path_sequencefasta-and-complete2path_sequencefasta-output-files) you write: "You can pick the configuration of which the SSC region is in the same direction with most of your data or outgroup, which makes downstream...
Hi there. Due to disk quota (a couple of megabytes) of home dir, I installed database in a non-home dir. But I can't find any options in the main script...
Hi, GetOrganelle works well for mitochondria and chloroplasts. Do you think it would for assembling bacterial chromosomes or bacterial plasmids?
Thanks for developing GetOrganelle, it seems very complete and thorough. I am trying it for species of Ericaceae, hopefully it will handle the small repeats better than other software I...
Hi, I would like to extract plant mitochondrial reads from the whole genome Oxford Nanopore? Do you have any idea which software-related for this? Like GetOrganelle for Illumina reads. Thank...
Hello! I am assembling a beetle mitochondrial genome, using this [mt genome](https://www.ncbi.nlm.nih.gov/nuccore/NC_038115.1) from the same beetle family as the seed. It appears mostly assembled, except for one region that has...
I we're trying to assemble the sequences using pacbio data and I've ran this twice; one with the short reads and another will the pacbio reads. without short reads: ```...
Hello Jianjun, When testing Get_Organelle on a fresh install using your Arabidopsis test dataset, an error came up that I've never seen before. Attaching the log for your perusal and...
Hi The database installation by default installs the files only in the LabelDatabase direcotry, but the program needs these files in the SeedDatabase directory too. I tried setting path, but...
