Brian Isett, PhD

icon company UPMC Hillman Cancer Center @HCC-data-sciences-pub icon location Pittsburgh, PA icon location Data scientist in bioinformatics for UPMC Hillman Cancer Center via University of Pittsburgh.

Results 5 comments of Brian Isett, PhD

clearDetections() does not reset TMA isEditable to true

Hi @petebankhead - thank you for your helpful reply! That does the trick. It totally makes sense to lock annotations once a detection is performed. I got distracted by isEditable...

Use `ome-types` to build OME data

Might be having an issue related to this! In particular: `openslide` parses the `tiff.ImageDescription` metadata of WSI files but I don't think this is carried through in the output ome.tiff...

Use `ome-types` to build OME data

Thank you so much! You are right -- I think copying the metadata as I described above corrupts the file for certain applications (QuPath did not like it) but oddly...

Use `ome-types` to build OME data

Thank you so much! Yes I was able to convert hovernet -> qupath compatible cell object .geojson so that is great. Thank you for pointing me towards the docs. Out...

How to use 12 hour time?

I agree that this should be a setting in the menu and at the very least ... a setting in the settings.h file? choosing 12 vs. 24 hour strikes me...