KforKuma

PAGA_Tree: 'int' object has no attribute 'encode'

1

I would like to try a method simple and fast like PAGA_tree, but this error reoccured multiple times. /usr/local/lib/python3.7/site-packages/umap/rp_tree.py:450: NumbaWarning: Compilation is falling back to object mode WITH looplifting enabled...

Segfault / python free() invalid size error during compute_transition_matrix

5

I followed up the tutorial [here](https://cellrank.readthedocs.io/en/latest/notebooks/tutorials/kernels/200_rna_velocity.html) and with the pancreas exmaple dataset. Every time I went to the line `vk.compute_transition_matrix()`, python produced a segfault. Sometimes it just corrupted, other times...

## 🐛 Bug When I am trying example code `tbadb = dbLoad("https://gitlab.com/immunomind/immunarch/raw/dev-0.5.0/private/TBAdb.xlsx", "tbadb", .species = "Homo Sapiens", .chain = c("TRB", "TRA-TRB"), .pathology = "CMV") tbadb` it firstly returns an error,...