Kevin Sayers

Results 19 issues of Kevin Sayers

Added in a little more information and reorganized

- [ ] Slurm partitions table as currently the only partition is test - [x] Info regarding GPU nodes not currently available - [ ] Swift File Systems - [x]...

Based on discussion with @diskwarrior document or have a workshop on strategies for packing multiple jobs into a node.

Add info on working with HDF5 files, including Lustre striping optimizations.

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** The Snakemake head job currently runs on Fargate with `1 vcpu`....

enhancement

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** A github repo can't be used as the `mainWorkflowURL` currently...

bug

The rnaseq workflow in `demo-nextflow-project` is currently broken because of changes to the workflow in the Nextflow repository, in particular it specifies a recent development version of Nextflow. Specifying the...

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** Currently the context supports specifying the `maxVCpus`, further support for `minVCpus`...

enhancement

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** Workflow managers commonly create a local working directory which can be...

enhancement

If Docker is only enabled for a specific CWL CommandLineTool the parser does not correctly modify the nextflow.config. If Docker is found in the parent workflow or any of the...