KatjaRM

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Error when plotting regulon activity by cell type

I did not. Weirdly it happened with only one specific dataset but not with other ones. In the end I used a very annoying and time consuming workaround involving excel...

Error when plotting regulon activity by cell type

Thank you! That helps!!! :)

`subset(features = ...)` yields `Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds` after SCTransform

Hi! Did you end up solving the issue? And could you provide the code for how you modified CaclN exactly? I would like to try whether your override solution works...

`subset(features = ...)` yields `Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds` after SCTransform

I see, thanks! Bummer... :)

`subset(features = ...)` yields `Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds` after SCTransform

Yes, I agree. My next dataset will also be analysed using scanpy. The layers just cause issues for me.