Kangcheng Hou

Somewhat strangely, I couldn't replicate this error using either python 3.9 / 3.10. For example in https://colab.google/ (3.10) ```python !python --version !pip install git+https://github.com/martinjzhang/scDRS.git import os import pandas as pd...

1. It looks like `Trait1` does not have any significant cells. Can you clarify what you mean that "they are significant on certain cell groups"? 2. The power of scDRS...

Thanks for the clarification. > 1.Yes, trait 1 does not exhibit significant cells across all cell types. However, at the same time, it is significant in some cell types (i.e.,...

`assoc_mcp` and `assoc_mcz` in the produced dataframe are at the nominal level (so you need to convert them to FDR by yourself). But the plotting function would take cell-type and...

Hi @QianChwnLyn The small square for AD-MG denote cell-type-level association significance at FDR < 0.05, and therefore is expected to change if you plot one trait vs. multiple traits. And...

yes see https://github.com/martinjzhang/scDRS/pull/75/commits/83d626445aeaa4bc556e7dcb553844921b2e2dc7 (i can't directly merge into master which is protected) on the other hand, user could just take the raw dataframe and plot in the style as they...

you could git clone the latest version to use this updated scdrs

Hi can you check what version are you using? `scdrs.__version__` This issue should be resolved with `pip install -U scdrs`

Can you try again to install the latest master branch? ``` git clone https://github.com/martinjzhang/scDRS.git cd scDRS git checkout -b v102 v1.0.2 pip install -e . ``` You may also try...

Can you type ??scdrs.util.plot_group_stats So we can see the code that you are using On Fri, Feb 16, 2024 at 10:13 AM Huiflorazhan ***@***.***> wrote: > Can you try again...