KabitaBaral1

[BUG]TypeError: Object dtype dtype('O') has no native HDF5 equivalent

5

Hi, I am running pySCENIC following this vignette: https://github.com/aertslab/pySCENIC/blob/master/notebooks/pySCENIC%20-%20Integration%20with%20scanpy.ipynb Everything runs smoothly until the step of creating loom file, that is, the following snippet of code: export2loom(df_tpm.T, regulons, LOOM_FNAME, cell_annotations=adata.obs['cell_type'].to_dict(),...

output interpretation

3

Dear Shorah developers, First, I would like to say that you have a great program that is very useful for local haplotype reconstruction, especially if we try to genotype across...