Karim Hajji

icon location Bioinformatician at the Dutch National Institute for Public Health and the Environment (RIVM)

Results 2 issues of Karim Hajji

The source of the training file for Listeria monocytogenes is not listed in the readme

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A training file is provided for Listeria, but which reference was used is not in the readme. [CHEWBBACA/prodigal_training_files/README.md ](https://github.com/B-UMMI/chewBBACA/blob/d7572c085677319500546dbb4ed8eee69cc3d2c2/CHEWBBACA/prodigal_training_files/README.md)

Type: Maintenance
Status: In Progress

Add functionality to use chewBBACA's v3 new hashed output

chewBBACA recently got an update that includes a feature to output hashed sequences instead of allele numbers. Since cgmlst-dists has specific filters for the input data, it is incompatible with...