JupiterPlot
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JustinChu
A Circos-based tool to visualize genome assembly consistency
Some contigs will be duplicated or can be placed in a graph. It would be nice somehow to place contigs as a secondary match in that location and display it...
For debugging on different systems and testing out the code there should I should include a small demo on a reasonable sided genome. File sizes could be an issue. Should...
Position of scaffold is determined by the median alignment position of scaffold along the sequence. This information may be useful for other applications.
Other than manually editing the config files, removal of chr names is not possible. This feature will be useful if using a draft or fragmented reference seqeunce.
While I'm at it add gaps to scaffold too
Alpha of links can be changed by editing the links file (changing the `_a5` to something else), but this should be an option.
Dear Justin Chu and authors, When I changed the parameters of minimap2 (from asm10 -> asm20) it helped to increase the connection, and it looks similar to result from nucmer...
Thanks for writing this tool, it works very well. I was wondering if it would be possible to add an option such that all contigs (query and ref) are shown,...
Hi Developer, I am wondering how can I keep configure files that are removed at the last step of your script, which shows the information like that: `rm test.rv.links.bundled test.fw.links.bundled...
Hi @JustinChu , Can this be added to the conda or any other container system? Thanks
