JunhakAhn issues

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Results 2 issues of


                                            JunhakAhn

Ensemble mode issue

Hi. I tried to run ensemble mode neusomatic. Since there was no 'SomaticSeq.Wrapper.sh' on 'https://github.com/bioinform/somaticseq/blob/master/SomaticSeq.Wrapper.sh', I ran 'somaticseq_parallel.py' using recommended command on 'https://github.com/bioinform/somaticseq/' and got 'Ensemble.sSNV.tsv' However, when I tried...

Depth 0 position for platinum call

Hi, I downloaded NA12878 bam file (114G) and NA12878 VCF file from the ENA (https://www.ebi.ac.uk/ena/browser/view/PRJEB3381). As far as I know, platinum variant calls are the positions with the 'PASS' filter...