NIfTI.jl

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Adding Images.jl support

38

I'm trying to update this package and add Images.jl support. I've gotten to the point where I can get `include("./src/NIfTI.jl")` working on Julia 1.0. However, I'm not entirely sure how...

Tokazama

Simple 1 character change

jondeuce

#31

vsaase

pixdim should be multiplied rowwise, matrix multiplication leads to dimension mismatch error

vsaase

Implement abstract array methods

2

Hi, this adds support for setting indices, slicing and elementwise operations. Operations with multiple NIVolumes are only allowed if they have the same headers, which is maybe too restrictive and...

vsaase

Is this still active?

1

Haven't see development for a while?

jamesthesnake

sometimes slice spacing can be larger than slice thickness use new DICOM.jl tag arguments also fixes qform_code if method2 is not available

vsaase

Why are method2 and method3 mutually exclusive?

1

https://github.com/JuliaIO/NIfTI.jl/blob/a9e50b9f6ddf5e8b7c09fffdfe9a3d48a962c0fe/src/NIfTI.jl#L344 Hi, the nifti standard (https://nifti.nimh.nih.gov/nifti-1/documentation/nifti1fields/nifti1fields_pages/qsform.html) does'nt say that. also here https://github.com/JuliaIO/NIfTI.jl/blob/a9e50b9f6ddf5e8b7c09fffdfe9a3d48a962c0fe/src/NIfTI.jl#L366 why do you write method2 || method3, this leads to a problem with e.g. ITK-SNAP which then thinks...

vsaase

bugs #tokazama-imagemeta

8

First, the new NIfTI integration with JuliaImages looks awesome! It looks to me like it's close to beeing finished, so here are the things that I saw when trying it:...

korbinian90

feature request/change

1

IMHO, it might be desirable to have getaffine and setaffine generate and write matrices suitable for Julia's 1-based indexing. The relevant fields of NIfTI headers are such that they work...

JohnAshburner