JuliaMcGonigle

It's solved. To build the bracken database ref file with bracken-build, you need the library/ and taxonomy/ folders from the kraken-build commands. The taxonomy is easy to reproduce, however the...

Yeah I would agree that the bracken build files should have just been made and released with the kraken database k2d files. I don't think there is a way to...

Hey. I also had this issue with a custom kraken database that I built. Wanted to share what I found to be the issues and how I solved them. Issue...

Is the --confidence flag in kraken2 doing the same thing as Conifer?

Hello, I am having the same error. Please help, I would love to use your SNP calling program! Thanks.