Julia Holz

When there are characters that are not A, C, G, or T in the sequence of the input FASTA file, salmon's FASTA parser replaces them with a base selected uniformly...

I had a similar error, but was able to fix it by adding the line: export LD_LIBRARY_PATH=/path/to/lib:$LD_LIBRARY_PATH to my .bashrc file, so maybe that's something to try if you haven't...

Hello! I did some work with the oxford nanopore error model last summer. There's a blog post about the ONT long read quantification here: https://combine-lab.github.io/salmon-tutorials/2021/ont-long-read-quantification/ . In terms of length...