Juliana Botero Cardona

icon location Microbiologist Universidad Libre de Colombia Biotechnology. Msc Universidad de Córdoba, Spain. PhD student Ghent University, Belgium LMG lab

Results 3 comments of Juliana Botero Cardona

Why am I getting more CDs with KO numbers when using the tax scope "bacteria" compared to without the tax scope "bacteria"?

I apologize for not mentioning earlier that when using the "-tax scope bacteria" parameter, I obtained a lower number of annotated CDS (coding sequences). However, among the annotated CDS, a...

Why am I getting more CDs with KO numbers when using the tax scope "bacteria" compared to without the tax scope "bacteria"?

Dear @Cantalapiedra, Thank you very much for your response. In my case, I used the following argument: emapper.py -i FA2.faa -o FA2--output_dir output-eggnog/ -m diamond --cpu 8 --report_orthologs --dbmem --override...

relative evolutionary divergence (RED) values and median RED values

Dear @phugenholtz , Thank you very much for your reply. In the information provided in summary.txt, it states: "An unassigned species (i.e., s__) indicates that the query genome is either...