Julieanna Bacon

icon indicating a website link https://github.com/jbacon-cfs

icon location Boston, MA icon location Applied Math + ML for Scientific Problems ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ R&D ML @ ProFoundTx, prev DGMed, NASA, & CFS

Results 3 comments of Julieanna Bacon

Question about esm_embeddings

Same problem, it says it's skipping for every single complex.

Errors encountered when evaluating results

Same issue

Parameterize truncation_seq_length?

Seconding this! The specified `truncation_seq_length` in the README for the PDBBind dataset resulted only ~1% of uncorrupted data points. ![Screenshot from 2023-05-07 14-51-15](https://user-images.githubusercontent.com/6119491/236696953-71bc6dc1-cb4c-4a2d-aaf7-ea38816abdf7.png) Removing the `truncation_seq_length` limit entirely resulted in...