Joshua Meyers

PDBList.py update_pdb does not consider multiple file formats (in some parts...)

6

### Setup I am reporting a problem with Biopython version, Python version, and operating system as follows: ```python import sys; print(sys.version) import platform; print(platform.python_implementation()); print(platform.platform()) import Bio; print(Bio.__version__) ``` ```3.6.1...

Our guacamol scoring functions do not have a name as part of the object. Its also not straightforward to add a 'name' to the various ScoringFunction's. However each scoring function...

This MR fixes the function `pdb.map_uniprot_resnum_to_pdb`. Previously it read chains with the assumption that chain A == entity A. If chains IDs in the PDB start later in the alphabet,...

Hey nice library. I am interested in this function for reading the SIFTS residue XML files (which are a pain to parse!) `ssbio.databases.pdb.map_uniprot_resnum_to_pdb` Do you have any tips for going...

Heatmap polygon triangles don't meet exactly

6

Hey Marc, Lovely library. I've used it to make some great heatmaps from a data dictionary. Just thought I'd file a bug report as the triangles don't quite match up...

Ability to ignore requirements when using PipelineDecorator.pipeline

1

## Proposal Summary additional argument for `pipeline` decorator allowing access to `Task.ignore_requirements("mypkgname")`. ## Motivation I am running a pipeline using the decorator and a provided docker image. When launching the...