Jordi Valls Margarit
Jordi Valls Margarit
Dear all, I just only want to know, if pre.py realize the parsimony step for normalize... If is yes, i just only want to know which flag is related to...
Dear, I'm confused in order to use the parameters of svtools... in lmerge.... After use lsort, I want to merge al my samples wit lmerge. But I dont know how...
Dear all, I run all my samples with lumpy, the lumpy developers recommended me use the -P option in order to run svtools lsort. All my 808 samples are ran...
Dear, I try to ran bayestyper. First of all I ran KMC and bayestypertools without any problem, but when I want to run bayestyper cluster appear the following error: bayesTyper:...
Dear Jonas, I read the paper and I've to congratulate, because is really interesting! I contact to you because I'm interested to use BayesTyper to genotype my samples. I've 808...
Hi, my name is Jordi and I want to use the file svpop-truth-baseline.vcf.gz from https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=vgsv2019/vcfs/ But I dont know how it has been done.... From where you download this data??...
Hi Ryan, I have a new question about processing multiple samples by LUMPY... I 've 808 wgs samples at 30X (human and ref genome which I used is hs37d5 like...
Hi every one, I installed the program Gap2Seq, and I found different bugs (or I hope) in the binary Gap2Seq. when you ran the Gap2Seq like this: Gap2Seq --vcf insertions_filtered.vcf...
Dear, I only want to know which format return the program... I ran several programs to detect de novo insertions, but I want to know if the vcf which I...