mtag

mtag copied to clipboard

ValueError: On entry to DLASCL parameter number 4 had an illegal value

6

hi, I have encountered a problem and had no idea why this happen. Calling ./mtag.py \ --p-name pval \ --maf-min 0 \ --stream-stdout \ --n-min 0.0 \ --sumstats diabetes_new2.tsv,scz_new2.tsv \...

CharlesLambert70

ValueError: cannot reindex from a duplicate axis

18

Not sure if this is on my end or if this (perhaps?) has to do with the new `n_value` or `p_name` options. This is my first time not adding an...

carbocation

ValueError: Could not find SIGNED_SUMSTAT column

4

Hi I am using mtag for two different traits, then I got error like this. Any idea why is that? Thanks in advance. Best Haojie Calling ./mtag.py \ --se-name StdErr...

Haojie818

ValueError: cannot convert float NaN to integer

8

Hi, I got some error messages when the mtag analysis were all most finished. How can I fix it? Could you help me ? Thank you. " 2020/11/10/03:17:41 PM ......

Kai6662

"GWAS mean chi^2" not shown

2

Hi, I have run mtag successfully. However, my results of "GWAS mean chi^2" are omitted in the log file. It does say there are 7 columns, but three columns including...

xchangchop

Increase in Statistical Power

3

Hi users and developers, After the use of MTAG the mean chi2 of TRAIT_1 increased from 1.088 to 1.417. According to the increase of mean chi (1-mean chi^2 MTAG)/(1-mean chi^2...

pjordab

How can MTAG output N column in the meta-analysis

18

Hello~ We are performing meta-analysis with mtag but get an output file without the N column. Is there any setting we can obtain it? The MTAG codes are listed as...

Biajibiabia

Bumps [numpy](https://github.com/numpy/numpy) from 1.11.1 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...

dependabot[bot]

Differences in mean chi2 of the trait of interest and included traits

2

Dear MTAG developers,We are performing an MTAG analysis in which the trait of interest has a mean chi2 of 1.093.When performing MTAG with traits that have the following parameters, I...

pjordab

How can I use 1000G LD reference to perform MTAG based on GWAS from non-EUR population

1

Hi, I wonder if MTAG use the LD reference file in **ld_ref_panel** folder, even if I do not specify the _--w-ld-chr_ command. I would like to apply MTAG to GWAS...

jianvhuang