mtag
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JonJala
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
## Error converting summary statistics ``` TypeError: ufunc 'chdtri' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the...
Hi all, I ran MTAG for 6 traits. The summary statistics were from GWAS using mixed models. Trait 5 was categorical, and all others continuous. To run MTAG, I converted...
Hi, I ran MTAG on two traits and these are my FDR results: 2019/10/15/09:11:29 AM Beginning maxFDR calculations. Depending on the number of grid points specified, this might take some...
Hi, We have GWAS summary statistics for armfat percent, trunkfat percent, and waistc with the following columns (reformatted to fit MTAG defaults): chr bpos a1 TEST n beta se L95...
Hi, I have case-control GWAS summary statistics which does not have the N-columns. I tried using the "--use-beta-se" option, but I am getting an error that N was not computed....
need to add: from functools import reduce and also there is a print that is missing parens
Hi I'm trying to run MTAG on 93 traits simultaneously... After Munging and Merging the log was the following: > ..... > 2018/10/02/02:28:26 PM Dropped 0 SNPs due to strand...
The mean chi2 statistic of trait 1 is less than 1.02, which may lead to unstable estimates. To perform MTAG on your results anyways, include the --force option, though the...
Hi, a quick question, can I carry out a meta-analysis using mtag outputs, as I understand several files will be generated using MTAG. My goal is to generate one file...
Dear Omeed, I have two phenotypes that are moderately correlated (rho = 0.6). Therefore, I used MTAG to boost the power of my single-GWASs. However, when inspecting the results, I...
