John Urban

I ran into this same error. It wasn't totally surprising because I was using a data type not exactly expected by smoove -- paired-end HiC data. I have a specific...

Apologies Jorg -- I suppose I left my 'solution' open-ended in that regard. Also apologies for the delayed response -- I took last week off. After editing the script called...

I was hoping to use -pc and -split together as well Was this feature ever addressed? Does that 4-step protocol work as intended?

I'm just a random guy who happened to notice this, not a developer, but it is the expected behavior that the assemblies are ever-so-slightly different from run to run on...

@KasperThystrup Hey let us know what you find with a single core if you go that route.

I'm also seeing this on Development Version (1.11.08) (https://github.com/aidenlab/Juicebox/wiki/Download) for Mac. The .hic file loads fine on the web (https://aidenlab.org/juicebox/), but gives the "error loading .hic file" message on the...

@MahdiSayadSadr Juicebox-2.15 solved it for me (https://www.dropbox.com/s/hfre4oqac5jirmh/Juicebox-2.15.dmg). Thanks for sharing!

Hi Robert, Thanks for the tips. As for gap-filling -- yes I was able to accidentally fill small gaps using minimap2 and RaCon. It then occurred to me that Minimap2...

The STAR BAM error(s) may be related to issue #588 This is based on: ``` prothint/evidence.gff: No such file or directory ```

For the STAR BAM problem, I found some more hints to what may be going on. > `./braker3/GeneMark-ETP/proteins.fa/nonhc/for_prothint/loginfo` ``` # check before the run error, numerical value is expected for...