Joe Ziminski

ANTS antsMotionCorr implementation

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### Summary Are there plans to implement antsMotionCorr [1] in niypyes ants package? [2]. I would be happy to help with this using one of the other ants commands as...

Question About Answer

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Hi fifthist, [Apologies I accidently posted this question separately on a work account, if you could kindly delete the other post I will remove this tag] Thanks again for this...

for issue #84, PR #91 changes the flags to -a and --additional. However, it would be preferable to remove this flag and for brainreg to accept N images, and use...

Support for SSH key pairs

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Thanks for this excellent package for syncing folder trees, it is exactly what we need for our project. We want to use the private_key argument on pysftp.Connection for SSH key...

Adding exceptions classes

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Before submitting a pull request (PR), please read the [contributing guide](https://github.com/brainglobe/.github/blob/main/CONTRIBUTING.md). ## Description Begin to implement custom exceptions as mentioned in brainglobe/brainreg#82. Started by a custom exception for failed file...

Results in the following error running Windows 10 in Pycharm (pip install): (test_brainreg_dev) C:\fMRIData\git-repo\brainreg>pip install -e '.[dev]' ERROR: '.[dev]' is not a valid editable requirement. It should either be a...

Documentation of `executor.update_parameters` arguments

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Thanks for making this excellent tool! It works basically out of the box and has proved extremely useful. Apologies if I am missing something obvious, but it would be great...

KS2.5 / KS3 'spike holes' patches released

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Hi Everyone, A patch was recently released in [KS2.5](https://github.com/MouseLand/Kilosort/compare/kilosort25) and [KS3](https://github.com/MouseLand/Kilosort/commit/d2b5c27465dae22b861e2a5183b6830e61ec4297) to fix the 'spike holes' bug. There were pushed as commits to the relevant branches in the KS repository....

Change default `durations` argument from list in `generate.py`

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Just leaving here so I don't forget, happy to make a PR on this. Some of the default arguments for functions in `generate.py` are mutable, which is not reccomended due...

Standardising parts of the API.

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Following a conversion in #2299, a number of instances where the API is inconsistent were highlighted. This issue is opened as a place to discuss and begin fixing these: -...