JingChunSun

Snakefile_TGS运行报错

15

郑博士，您好： 感谢您开发的PanPop软件，对于我们做SV分型合并的有很好的帮助。但是我在使用自己的数据时候出现了报错，log报错如下： [M::mm_idx_gen::141.216*1.24] collected minimizers [M::mm_idx_gen::182.390*1.42] sorted minimizers [M::main::182.390*1.42] loaded/built the index for 613 target sequence(s) [M::mm_mapopt_update::192.837*1.39] mid_occ = 117 [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 613...

KeyError: "Only a column name can be used for the key in a dtype mappings argument. '4' not found in columns."

1

I got an error running the following programme with the following command: cphasing pipeline -f NX.hifi.asm.bp.p_ctg.fasta -pcd pass.fq.gz -t 128 -n 19:2 The error is reported as follows: